YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|110595716, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWRRMANPPQ NVGLFTISAS SHRGGTSGPL HMEIAILFAL ILLNGVFAMS ELALVSARKT  60
   61 RLQKLIDEGD SGAIAAAKLG ENPTRFLSTI QIGITSIGVL NGIVGESALA KPLGEWLLGL 120
  121 GVEPQLAGYL ATGLVVVLIT YFSIVVGELV PKRLGQSYPE TLARVVARPI NWLALATKPF 180
  181 VRLLSISTEG LLRALGVKEY SASAVTEDEI HAVLAEGTSA GVIESHEHQM VRNVFRLDDR 240
  241 QIGSLMVPRA DVVFLDVEEP FEENLRRIEE SDHARFPVVR GGMENILGVL NARQWLSRTV 300
  301 RDAQARDLTT QPLQTALYVP ETINAMELLD NFRQSDVQMA FVIDEYGEVQ GIVTVQDIIE 360
  361 AITGEFQPRD PETSWAMERE DGSWLLDGHI PVPELKDRLQ LATVPEEDRG RYQTLSGMVM 420
  421 LLTGKLPKVT DTVQWERWRF EVVDMDGKTI DKVLASRLPD EEVSADPASG D

Type	Start	End	Confidence
Non-Cytoplasmic	1	33	0.55
Transmembrane Helix	34	55	0.93
Cytoplasmic	56	86	0.92
Transmembrane Helix	87	109	0.79
Non-Cytoplasmic	110	125	0.83
Transmembrane Helix	126	147	0.91
Cytoplasmic	148	471	0.72