YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|110595055, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVPAKMSTA PHGRRGHGMA LWRVSAMRPR STVNQLTRPM VSEYTRFASQ GVDLASVTPS  60
   61 ATRQQNAAVV SSRQRKAMGW LTLMEQAGYE PLCCRAGPSL RCRVVVAAAL ACQRRPLACD 120
  121 KRFAPVGSGQ GQPHDRPMQQ QAQTPTESGV GRPSPPQHQR QARQRQLDGE VDARVQQPAQ 180
  181 LGTRAPPGQA GEGIRAIRGM KRVMHGASPD GVLHPVAVLC KERGPPNSAL RRTAAAWCGR 240
  241 LPGGRERSRS GAWPGRTQGV TPVSRRTGLI IRALLFRCQD ACVDTLLLLK AAIMGVVEGL 300
  301 TEFLPISSTG HLILAGSLLG FDDAKAKVFD IAIQTGAIFA VILVYWQRIR ATLVALPTER 360
  361 QARRFALNVL IGFLPAVLLG LLLGKAIKAH LFTPVVVAST FILGGFVILW AERRQQAAVR 420
  421 IHAVDDMTPL DALKVGLVQC LAMVPGTSRS GATIIGGMLL GLSRKAATDY SFFLAIPTLI 480
  481 GAGVYSLYKE RALLSAADIP LFAVGLVFSF ISAWLCVRWL LRYISLHSFV PFAWYRIAFG 540
  541 LVVLATAWSG LVTWAE

Type	Start	End	Confidence
Cytoplasmic	1	295	0.80
Transmembrane Helix	296	315	0.58
Non-Cytoplasmic	316	327	0.75
Transmembrane Helix	328	346	0.92
Cytoplasmic	347	364	0.88
Transmembrane Helix	365	384	0.95
Non-Cytoplasmic	385	390	0.76
Transmembrane Helix	391	411	0.95
Cytoplasmic	412	466	0.83
Transmembrane Helix	467	488	0.87
Non-Cytoplasmic	489	498	0.59
Transmembrane Helix	499	521	0.89
Cytoplasmic	522	531	0.69
Transmembrane Helix	532	552	0.94
Non-Cytoplasmic	553	556	0.54