YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: Ppn-PE
Protein type: Globular with Signal Peptide
Type Confidence: 0.99
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLSRRLCST ALVAFIVLAS IHDSQSRFPG LRQKRQYGAN MYLPESSVTP GGEGNDPDEW  60
   61 TPWSSPSDCS RTCGGGVSYQ TRECLRRDDR GEAVCSGGSR RYFSCNTQDC PEEESDFRAQ 120
  121 QCSRFDRQQF DGVFYEWVPY TNAPNPCELN CMPKGERFYY RQREKVVDGT RCNDKDLDVC 180
  181 VNGECMPVGC DMMLGSDAKE DKCRKCGGDG STCKTIRNTI TTKDLAPGYN DLLLLPEGAT 240
  241 NIRIEETVPS SNYLACRNHS GHYYLNGDWR IDFPRPMFFA NSWWNYQRKP MGFAAPDQLT 300
  301 CSGPISESLF IVMLVQEKNI SLDYEYSIPE SLSHSQQDTH TWTHHQFNAC SASCGGGSQS 360
  361 RKVTCNNRIT LAEVNPSLCD QKSKPVEEQA CGTEPCAPHW VEGEWSKCSK GCGSDGFQNR 420
  421 SITCERISSS GEHTVEEDAV CLKEVGNKPA TKQECNRDVK NCPKYHLGPW TPCDKLCGDG 480
  481 KQTRKVTCFI EENGHKRVLP EEDCVEEKPE TEKSCLLTPC EGVDWIISQW SGCNACGQNT 540
  541 ETRTAICGNK EGKVYPEEFC EPEVPTLSRP CKSPKCEAQW FSSEWSKCSA PCGKGVKSRI 600
  601 VICGEFDGKT VTPADDDSKC NKETKPESEQ DCEGEEKVCP GEWFTGPWGK CSKPCGGGER 660
  661 VREVLCLSNG TKSVNCDEEK VEPLSEKCNS EACTEDEILP LTSTDKPIED DEEDCDEDGI 720
  721 ELISDGLSDD EKSEDVIDLE GTAKTETTPE AEDLMQSDSP TPYDEFESTG TTFEGSGYDS 780
  781 ESTTDSGIST EGSGDDEETS EASTDLSSST DSGSTSSDST SSDSSSSISS DATSEAPASS 840
  841 VSDSSDSTDA STETTGVSDD STDVSSSTEA SASESTDVSG ASDSTGSTNA SDSTPESSTE 900
  901 ASSSTDDSTD SSDNSSNVSE SSTEASSSSV SDSNDSSDGS TDGVSSTTEN SSDSTSDATS 960
  961 DSTASSDSTD STSDQTTETT PESSTDSTES STLDASSTTD ASSTSESSSE SSTDGSSTTS1020
 1021 NSASSETTGL SSDGSTTDAT TAASDNTDIT TDGSTDESTD GSSNASTEGS TEGASEDTTI1080
 1081 STESSGSTES TDAIASDGST TEGSTVEDLS SSTSSDVTSD STITDSSPST EVSGSTDSSS1140
 1141 STDGSSTDAS STEASSTDVT ESTDSTVSGG TSDTTESGPT EESTTEGSTE STTEGSTDST1200
 1201 QSTDLDSTTS DIWSTSDKDD ESESSTPYSF DSEVTKSKPR KCKPKKSTCA KSEYGCCPDG1260
 1261 KSTPKGPFDE GCPIAKTCAD TKYGCCLDGV SPAKGKNNKG CPKSQCAETL FGCCPDKFTA1320
 1321 ADGENDEGCP ETTTVPPTTT TEETQPETTT EIEGSGQDST TSEPDTKKSC SFSEFGCCPD1380
 1381 AETSAKGPDF EGCGLASPVA KGCAESENGC CPDGQTPASG PNGEGCSGCT RERFGCCPDS1440
 1441 QTPAHGPNKE GCCLDTQFGC CPDNILAARG PNNEGCECHY TPYGCCPDNK SAATGYNQEG1500
 1501 CACETTQYGC CPDKITAAKG PKHEGCPCET TQFGCCPDGL TFAKGPHHHG CHCTQTEFKC1560
 1561 CDDEKTPAKG PNGDGCTCVE SKFGCCPDGV TKATDEKFGG CENVQEPPQK ACGLPKETGT1620
 1621 CNNYSVKYYF DTSYGGCARF WYGGCDGNDN RFESEAECKD TCQDYTGKHV CLLPKSAGPC1680
 1681 TGFTKKWYFD VDRNRCEEFQ YGGCYGTNNR FDSLEQCQGT CAASENLPTC EQPVESGPCA1740
 1741 GNFERWYYDN ETDICRPFTY GGCKGNKNNY PTEHACNYNC RQPGVLKDRC ALPKQTGDCS1800
 1801 EKLAKWHFSE SEKRCVPFYY SGCGGNKNNF PTLESCEDHC PRQVAKDICE IPAEVGECAN1860
 1861 YVTSWYYDTQ DQACRQFYYG GCGGNENRFP TEESCLARCD RKPEPTTTTP ATRPQPSRQD1920
 1921 VCDEEPAPGE CSTWVLKWHF DRKIGACRQF YYGNCGGNGN RFETENDCQQ RCLSQEPPAP1980
 1981 TPPRAPAPTR QPDPAPTVAQ CSQPADPGQC DKWALHWNYN ETEGRCQSFY YGGCGGNDNR2040
 2041 FATEEECSAR CSVNIDIRIG ADPVEHDTSK CFLAFEPGNC YNNVTRWFYN SAEGLCDEFV2100
 2101 YTGCGGNANN YATEEECQNE CNDAQTTCAL PPVRGRCSDL SRRWYFDERS GECHEFEFTG2160
 2161 CRGNRNNFVS QSDCLNFCIG EPVVEPSAPT YSVCAEPPEA GECDNRTTAW FYDSENMACT2220
 2221 AFTYTGCGGN GNRFETRDQC ERQCGEFKGV DVCNEPVTTG PCTDWQTKYY FNTASQACEP2280
 2281 FTYGGCDGTG NRFSDLFECQ TVCLAGREPR VGSAKEICLL PVATGRCNGP SVHERRWYYD2340
 2341 DEAGNCVSFI YAGCSGNQNN FRSFEACTNQ CRPEPNKQDN EIGQNPCDTF DAECQELRCP2400
 2401 YGVRRVAARS QPECTQCICE NPCEGYSCPE GQQCAIDVAS SDDRQFAPVC RDIYKPGECP2460
 2461 ALSANASGCA RECYTDADCR GDNKCCSDGC GQLCVHPARP TQPPRTQAPV VSYPGDARAA2520
 2521 LEPKEAHELD VQTAIGGIAV LRCFATGNPA PNITWSLKNL VINTNKGRYV LTANGDLTIV2580
 2581 QVRQTDDGTY VCVASNGLGE PVRREVALQV TEPVSQPAYI YGDKNVTQIV ELNRPAVIRC2640
 2641 PAGGFPEPHV SWWRNGQMFG LKNNLMARDY SLVFNSIQLS DLGLYTCEVY NQRRPVSLRV2700
 2701 TLKAVGPVRP LSPEEEQYMQ YVLNPATRPV TQRPSYPYRP TRPAYVPEPT VNVHAVLALE2760
 2761 PKNSYTPGST IVMSCSVQGY PEPNVTWIKD DVPLYNNERV QITYQPHRLV LSDVTSADSG2820
 2821 KYTCRASNAY TYANGEANVS IQSVVPVSPE CVDNPYFANC KLIVKGRYCS NPYYTQFCCR2880
 2881 SCTLAGQVAS PPLHPNAV

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle