YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|90307821, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.81
Topology Confidence:	0.43
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRKGALIFII ANFIVIAFLV NSVSTLLSLL FEDAATDAIS RTELPAPNST FIDQKKPIIP  60
   61 KIIHQTYKNE SIPAIWQEAQ QSCLELHPDY EYKLWTDEKA DAFIESQYPW FLETFRNYRY 120
  121 PIQRADAIRY FVLTYYGGIY IDLDDGCNRR LDPLLVYPAW VRKTSPTGIS NDIMGSVPQH 180
  181 PFFRRVIDSL QTYNRHWVLP YITVMYSTGP LFLSVIWKEY MAGRPSAYER VRVMMADEYN 240
  241 RHSWSFFTHH PGSSWHGKDA RLIFWMGGHW VLLTVLGFVL AGIVGAFLWW GYRRLILLGS 300
  301 KYFHRYSPIQ TRPSGAILNP SRSFSPSRKL GILPAFLQRR SSSRKRDEEN ALSDTVYELL 360
  361 NRPE

Type	Start	End	Confidence
Non-Cytoplasmic	1	6	0.43
Transmembrane Helix	7	31	0.69
Cytoplasmic	32	196	0.49
Transmembrane Helix	197	217	0.82
Non-Cytoplasmic	218	269	0.57
Transmembrane Helix	270	292	0.92
Cytoplasmic	293	364	0.64