YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|119196471, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.27
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDVVLEVLDT FLFDYLYALA APASQLGPLA YSQIPDGLNK TASAAGGFFY RPASQYLYLE  60
   61 PSKYAYMSAL QRDNVYRQGF SLFIITWVFG LAVYFIFATL SYVLVFDKTT VNHPKYLKNQ 120
  121 IRQEIAQTSR ALPVMAILTV PFFLAEVRGY GKIYDTFAEA PFQLYNILQF PLFFMFTDGL 180
  181 IYWIHRGLHH PLVYKRLHKP HHKWIMPTPF ASHAFHPVDG WAQSLPYHIF PFIFPLQKFA 240
  241 YVFLFMAINV WTILIHDGEY ASNNPVINGA ACHTMHHLYF NYNYGQFTTL WDRLGSSYRK 300
  301 PNDELFRRET KMGEEEWKRQ VQEMETLVKE VEGDDDRQYL HEEEDKKNL

Type	Start	End	Confidence
Cytoplasmic	1	14	0.58
Transmembrane Helix	15	29	0.27
Non-Cytoplasmic	30	82	0.57
Transmembrane Helix	83	106	0.87
Cytoplasmic	107	125	0.59
Transmembrane Helix	126	145	0.69
Non-Cytoplasmic	146	164	0.73
Transmembrane Helix	165	185	0.89
Cytoplasmic	186	203	0.72
Transmembrane Helix	204	218	0.63
Non-Cytoplasmic	219	233	0.60
Transmembrane Helix	234	255	0.78
Cytoplasmic	256	349	0.83