YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|90307566, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	246	0.98
Transmembrane Helix	247	268	0.88
Non-Cytoplasmic	269	293	0.88
Transmembrane Helix	294	313	0.94
Cytoplasmic	314	323	0.81
Transmembrane Helix	324	343	0.94
Non-Cytoplasmic	344	348	0.76
Transmembrane Helix	349	369	0.89
Cytoplasmic	370	381	0.79
Transmembrane Helix	382	403	0.81
Non-Cytoplasmic	404	414	0.76
Transmembrane Helix	415	435	0.91
Cytoplasmic	436	500	0.97
Transmembrane Helix	501	523	0.85
Non-Cytoplasmic	524	536	0.82
Transmembrane Helix	537	558	0.90
Cytoplasmic	559	566	0.86
Transmembrane Helix	567	588	0.94
Non-Cytoplasmic	589	595	0.82
Transmembrane Helix	596	618	0.88
Cytoplasmic	619	631	0.75
Transmembrane Helix	632	648	0.73
Non-Cytoplasmic	649	661	0.63
Transmembrane Helix	662	682	0.92
Cytoplasmic	683	801	0.83

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTTGPNNVH LTLQRLHDQA PLAAYPDGFA ESTDHLVHSP WDATSSLLLI CASTGKLTHA  60
   61 PPGDSTTWSP GCLGQPGTTA TISSSNPPDS SASIPLRSFT PNSRPSSEFS SSLLDDSREK 120
  121 QGARRSPSSS PPPPSTPSES TFSVWSDTGD LAEQLASEED PLHIQLRKSL DQQAFSRTGA 180
  181 RSKRSRSRRV HYSEQEEERD VLGDSGISKE AIRVPEPPPR KPSRVETILA SIMSPGNRRT 240
  241 AQMHGLVGKP LLYFTSVFVS LGVFLFGYDQ GVMSGIITGP FFKDYFNQPT RAEIGTMVAI 300
  301 LEVGAFISSL CVGKVGDIIG RRKTILYGSI VFFIGGAFQT FATGIPMMLV GRIVAGLGVG 360
  361 ALSTIVPVYQ SEISPPHNRG QLACIEFTGN ICGYAASVWV DYFCSFINSH YSWRIPLFLQ 420
  421 CVMGTLLGVG SLIICESPRW LLDNDHDEEG MVVIANLYGG GDIHNDKARQ EYRDIKMDVL 480
  481 IQRQEGERSY ADMFRRYYKR VFIAMSAQAF AQLNGINVIS YYAPLVFESA GWVGRNAILM 540
  541 TGINAISYLG STIPPWYLVD RWGRRPILLS GAVAMIISLS LIAYWIYLDI PATPTLTVVF 600
  601 VMIYNAAFGA SWGPIPWLYP PEILPLSIRA KGASLSTAAN WAFNWLVGEL TPVLQEVIQW 660
  661 RLYLMHAFFC ATSFVVVYFL YPETSGVRLE DMDVLFGDAT TAMPTPVTPA ERNALMGPGS 720
  721 PVPSLDIRRG PDGRLPPEYD IPGLNIEPPT PSAKTGRSVE ETGSREGIGG WISNMVRRGR 780
  781 QGKKDNDDQG EYRRVGQDEE G