YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|90307565, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	58	0.64
Transmembrane Helix	59	78	0.79
Non-Cytoplasmic	79	144	0.49
Transmembrane Helix	145	167	0.85
Cytoplasmic	168	195	0.41
Transmembrane Helix	196	218	0.80
Non-Cytoplasmic	219	229	0.70
Transmembrane Helix	230	262	0.82
Cytoplasmic	263	282	0.73
Transmembrane Helix	283	304	0.93
Non-Cytoplasmic	305	602	0.79
Transmembrane Helix	603	624	0.94
Cytoplasmic	625	642	0.76
Transmembrane Helix	643	663	0.87
Non-Cytoplasmic	664	669	0.68
Transmembrane Helix	670	690	0.91
Cytoplasmic	691	698	0.80
Transmembrane Helix	699	721	0.90
Non-Cytoplasmic	722	747	0.84

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASNETAFAT GASSSADVRR RNVPGSEKAN GGSGVPEIVV DGKKAFAKKS SFLDVLDEWE  60
   61 FLIAPVIFTA LAFFTRMWRI GLSNIVTWDE AHFGKFGSHY IKREFYFDVH PPLGKMLVGL 120
  121 SGYLAGYNGS FEFKSGEKYP EELNYTFMRI FNAFFGVVCV PLAYFTAREL NFRRATVWLV 180
  181 TLMVLFENSY ATISRFILLD SMLLCFTFTT VFCWARFHRF QNQSFSCEWF MWLFLTGISI 240
  241 GCVCSVKMVG LFCTALVGLY TIEDLWNKFG DLKMPKTVLA QHLVARIIAL ILVPLAVYMF 300
  301 SFYIHFLVLE NSGPGDAQMS SLFQANLRGT TVGKDSPLEI AIGSKVTIKN MGYGGGLLHS 360
  361 HVQTYPSGSS QQQVTCYHHK DSNNDWFVYP NRTQPDYDPE GELRFIGDGD IIRLIHAQTG 420
  421 RNLHSHAIPA PITKSNWEVS CYGNTTVGDD KDHWVVEVVN DVASKDRSKI RTLTTAFRLR 480
  481 HPSLGCYLRA GNVNLPQWGF KQIETTCVKE NKPYDVHTHW NVESHVNERL QKGDPGAYKS 540
  541 PFLKDFIHLN VAMMTSNNAL VPDPDKQDDL ASKWWQWPVL NVGLRMCSWD NDTVKYFLLG 600
  601 NPFVYWGSTA SLAVFGLVVA WYLVRWQRGY TELSQADIDH IHYSGIYPLL GWVLHYLPFI 660
  661 IMARVTYVHH YYPALYFAIL TMGFCVNWFT QKLSKPVEWA VYFVLYAAVI SLFVVFKDIV 720
  721 FGMQGSNEQW QYLNWLSTWR IANPTSS