YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|90307216, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.27
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	47	0.93
Transmembrane Helix	48	67	0.68
Non-Cytoplasmic	68	99	0.70
Transmembrane Helix	100	120	0.79
Cytoplasmic	121	133	0.76
Transmembrane Helix	134	157	0.81
Non-Cytoplasmic	158	184	0.75
Transmembrane Helix	185	207	0.92
Cytoplasmic	208	217	0.95
Transmembrane Helix	218	246	0.79
Non-Cytoplasmic	247	274	0.68
Transmembrane Helix	275	295	0.93
Cytoplasmic	296	551	0.72
Transmembrane Helix	552	566	0.27
Non-Cytoplasmic	567	597	0.54
Transmembrane Helix	598	619	0.87
Cytoplasmic	620	639	0.53
Transmembrane Helix	640	659	0.88
Non-Cytoplasmic	660	669	0.46
Transmembrane Helix	670	689	0.65
Cytoplasmic	690	720	0.78
Transmembrane Helix	721	743	0.89
Non-Cytoplasmic	744	771	0.80

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSSPSSVRQ RGGKRHGGAD TPEKAPVSTA PPAFSPQPAM KPSSEWDYKL ALAVITAVAF  60
   61 VSRFYKISFP DQVVFDEVHF GKFASYYLQR TYFFDVHPPF AKLLFAFVGW LVGYDGHFLF 120
  121 DSIGDSYIEN KVPYVALRSL PATLGALTVP VVFLIMWESG YSLPACVLSA GLVLFDNAHV 180
  181 GEDRLILLDA TLVLSMALSV LCYVRFYKLR HEAFGRKWWK WLLLTGVSLS CVISTKYVGL 240
  241 FTFVTIGSAV LIDLWNLLDV NRRSGSLTLF QFGQHFAARA LGLIVVPFFF YLFWFQVHFA 300
  301 VLNRSGPGDN FMTPEFQETL MDNAMAAKSV GVQYYDTITI RHKQTKTYLH SHLDKYPLRY 360
  361 DDGRISSQGQ QVTGYPYNDT NNHWQILPSV PFAENDRLGH VIKNGDTVQL RHVVTDTILL 420
  421 THDVASPYYP TNQEFTTVSH ELAAGNRHND TLFQIKIEHG KSDEEFRTLA SLFKLIHVPT 480
  481 KVAMWTHTKP LPEWGFKQAE INGNKNAQES TNIWFAEDIP SLEPGNPRLI REPRQVKHMP 540
  541 FLKKYLELQA AMFYHNNALT ASHPYASEPF QWPFLLRGVS FWTKNDTREQ IYFLGNPVGW 600
  601 WIASSLLAVF AGIIGADQLS LRRGVDALEE IWGPGTRSRL YNSTGFFYLC WAAHYFPFYL 660
  661 MGRQRFLHHY LPAHIASCLV TGALVEFLFN VDPVNVEDTS DSARHRRRLG GVSARMGRQS 720
  721 IMTIWAVTIA ILSAVIWGFG FFAPLTYGTP GLDVAGVKAR QWLSYDLHFA K