YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|119195595, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYGGYGGYGG MYGGYGGMYG GMQNGDPNSL TNSFNQSTQA TFQMIESIVG AFGGFAQMLE  60
   61 STYMATHSSF FAMVSVAEQF GNLRNTLGSV LGIFTILRWI RTLFARLTGR PLPANATSLT 120
  121 PSAFSSFLSK GGSSATLSDN SRAPPRPSKK PFFFFLAAVF GLPYLMGKLI RALARSQEAE 180
  181 IRRQQEMAVG GNPQAGPIDP SKLDFCRVLY DYTPGTQAAA GIDLAVRKGD IVAVLSKTDP 240
  241 MGSPSEWWRC RARDGSVGYL PGPYLQTIQR KPQQRAITEA DNGPVSAAQI NTFEAFPEQT 300
  301 KATKGEDSPL TIGKGNTSEA RDKIGDISQD TLQKKTLDSE HR

Type	Start	End	Confidence
Cytoplasmic	1	41	0.80
Transmembrane Helix	42	64	0.66
Non-Cytoplasmic	65	79	0.71
Transmembrane Helix	80	100	0.80
Cytoplasmic	101	151	0.76
Transmembrane Helix	152	172	0.89
Non-Cytoplasmic	173	342	0.79