YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|90306523, gi|...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.78
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATQRKPGGY WSAENPIPTI QQFLESLDKD KQDRDRKIDE SGRSQAREQK HRGRYQDIEA  60
   61 APHKPAPAAK NRRRTVTDPT TGREIEIDDV GIEHMKAVEA PKITVPNANL GLPTAAQTRP 120
  121 DQPLREYKYK QDITAPPDPI AEGTTSDVPI HGEKTNILFH PTPSISYEPM FKSLEKRGGF 180
  181 LCAAIFWAIL IIGKLAGGAL KWLIPLSACV ASGVWLWIQD VIRKGRKHEW SAEQLRGQTA 240
  241 TANLLPESVE WLNSFLEVVW GLMDPEMFAG VADTIEDVMQ ASVPGIIENV RVAEIDQGSN 300
  301 PFRILSLRSL PESHATDLAE GMREHNLKTK SVEETTAEEE GGDTYTLECS FAYHAKPTGN 360
  361 TSSAKAENMH MMLVFYLGVK GLFGVPLPIF AELIEVVGTV RLRVQLTPQP PYAKTLTFSL 420
  421 MGLPHVRAGC VPMVRHGVNI LNLPLISNFV NYAIGAAASL YVAPKSMTLD LAQMLQGDDI 480
  481 QKDTLAMGIL WVRVHRAVGL SKQDKRGSYG GGSDPYINLS FSKYGKPMYC TRVICDDLNP 540
  541 VWEEGAGILV TPEIIKANEQ LSVELWDSDR NTADDIVGKV EISVQKMMEH PSKMYPMVSK 600
  601 LCGMDAGSEM PGELHWEVGY FGKPRMRREL RTDGKNKNLP ENLKGHPQLR DEIGSILNDE 660
  661 QDAVMHTPPD PLWPSGICSI VVHQIVNLQF ARIKGTLGNR KGNEYDPARE YGENTDEEGK 720
  721 NLPTSYCMIM LNDQLVYRTR AKAVSSKPIF NAGTERFIRD WRSAIITIAV RDQRYREHDP 780
  781 ILGVVPLKLS EILHARSQVT RWYPLDGGIG YGRIRVSLLF RSVETQLPRH MLGWDVGTFE 840
  841 VVSGGITAKG FNHHVKVKLR TSGSATSISR SACHGMQDGG GVYIDLGSEE SKRNTRLPVQ 900
  901 HRYRSAVVVE LPSGSTTGYS VIWLQDIADN EDAALDIPIW ITKNPQRLTQ NYIKEDNWEQ 960
  961 KRSPGLEDLT IAGRLQLSCR FAPGFSEVHE RLIADNNLRE TFEAWEACIA EGVRERRVQV1020
 1021 EVPENIKELH AKSLISERDI LRYNAVDGEI AQEKWFQGHG LDWSMAFGDS PHGLADFKQA1080
 1081 TDEEDSDKRA SIRSQAQGTD AQGQDEHYSR NAEGEPSNQA NASQNTEDEA QDGESIVTDA1140
 1141 NSHAGDFETR EDRRRRLGNK QNKRTEKRKL RGSMQWAPAR NAAFVKHEAT FALKKIKNKV1200
 1201 SGSLTGREPD IETEIG

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle