YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|119193789, gi...
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVAVALAYHP TVAHYLRFVA TTVGRDKVLR TLQYLSRFLA WYLYRTNYSQ ASISPFEAIK  60
   61 KQFALTRKLL RVGKNVEHFK AAAVALDSKT APAGGSSAVS AAADPVLKYL AVGRQLGYAV 120
  121 YLSYDMVTYL DAAGIRKLST VKKLQSQALK AWMAGLLCSA IAGVYSMWRL RDLERTVNKQ 180
  181 DGEGALEGKK IERERAAVTT QLVSDICDLT IPTSTLGYAN LDDGIVGIAG TISSLIGAWS 240
  241 AWKKTA

Type	Start	End	Confidence
Cytoplasmic	1	147	0.77
Transmembrane Helix	148	168	0.87
Non-Cytoplasmic	169	223	0.80
Transmembrane Helix	224	242	0.74
Cytoplasmic	243	246	0.75