YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|90306017, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	47	0.91
Transmembrane Helix	48	70	0.92
Cytoplasmic	71	77	0.88
Transmembrane Helix	78	98	0.94
Non-Cytoplasmic	99	137	0.92
Transmembrane Helix	138	159	0.89
Cytoplasmic	160	167	0.78
Transmembrane Helix	168	188	0.92
Non-Cytoplasmic	189	202	0.85
Transmembrane Helix	203	223	0.92
Cytoplasmic	224	236	0.83
Transmembrane Helix	237	256	0.91
Non-Cytoplasmic	257	265	0.79
Transmembrane Helix	266	289	0.88
Cytoplasmic	290	296	0.84
Transmembrane Helix	297	316	0.90
Non-Cytoplasmic	317	319	0.73
Transmembrane Helix	320	340	0.88
Cytoplasmic	341	353	0.82
Transmembrane Helix	354	373	0.88
Non-Cytoplasmic	374	408	0.87
Transmembrane Helix	409	432	0.92
Cytoplasmic	433	634	0.92

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAPYAPDYA SYNWTGAPSN FSLATDPVLG GDSRFENLNK WFQSGDQAYI IIASAMVMVM  60
   61 IPGLAFLYSG LARRKSALSL IWACMGSMSV VFFQWYFWGY SLAFSPTATN GFIGNLRNFG 120
  121 LMKTLADPSP GSALIPGLLF AFYQMQFCAV TAAIIMGAVA ERGRLLPAMV FVFFWATIVY 180
  181 CPVTCWVWNS NGWAAKYGVM DYAGGGPVEI VSGMSGLAYS MVLGRRHEHM MLNFRPHNVS 240
  241 LIVLGTVLLW FGWLGFNGGS AFGANLRAVI ACWNSNLTAA FASITWVLLD SRLSGKWTMV 300
  301 GWCSGTISGL VAATPASGFI PLWASVILGV VTGLVSNYCT KIKFWLKIDD SMDIFAEHGV 360
  361 AGIIGLIFNA LFGDDAIVGL DGVNVGAINP ETHTHVGGWI IHNYRQLYIQ LAYIVACMGY 420
  421 AFVVSALLAY AINYIPGLHL RASEEAELLG MDDDQLGEFA YDYVEVRRDH LAWTPQTMQP 480
  481 CDHTHQVPRS DLYGSQAHSA MAARPVQNGK ISPDRSTDNI PGESPSGTQA TSGPTIRNPS 540
  541 PERKRRLARV FGMKRVPAPS MPLHHVPITP TAPPAHTLET STHSAPAHEL PLPPMTQITP 600
  601 SHSVTPHATT IIPSPPPSTH SHHTEQDDLN EKSR