YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|119192426, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.61
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASSSSIQEE EHRNRLPTLL EVLSRRTLAP VDLFSFYIYM RDQQCSVDYL DFWLDVSQHM  60
   61 SLCRHYVREL RRSVLLETPE PEKLDSESPG LAPNGAGPSG PGYPFDGLGH DNDQRLSAFL 120
  121 RSEGRPSMYS ARSSMDSGRS GRRFSSVDRP RRVSDMFPQQ HHNNSNGSPG HTVARSDIRA 180
  181 SAVRILYTYL LPGSEREVVL PDTIVGDIVH MIEQEGRDDP EVFDTAKDYV FQAMERDAFP 240
  241 GFLQAKALGN LVPPSILARL VLALTSLGGG FWGAFYVVLT DQPRHVRCWV ILPFIVGAYF 300
  301 LASYQYRMDP ILAFIGFSEY TFMNWTSVRE PYIRSLLLKR AFVSLAFATF IAVALCVLFI 360
  361 FVPGTRL

Type	Start	End	Confidence
Non-Cytoplasmic	1	255	0.78
Transmembrane Helix	256	279	0.87
Cytoplasmic	280	285	0.70
Transmembrane Helix	286	304	0.89
Non-Cytoplasmic	305	310	0.59
Transmembrane Helix	311	328	0.61
Cytoplasmic	329	340	0.72
Transmembrane Helix	341	362	0.95
Non-Cytoplasmic	363	367	0.66