YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|90305550, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.70
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	71	0.88
Transmembrane Helix	72	96	0.86
Non-Cytoplasmic	97	111	0.78
Transmembrane Helix	112	132	0.88
Cytoplasmic	133	199	0.56
Transmembrane Helix	200	222	0.93
Non-Cytoplasmic	223	229	0.85
Transmembrane Helix	230	250	0.88
Cytoplasmic	251	308	0.86
Transmembrane Helix	309	331	0.70
Non-Cytoplasmic	332	341	0.82
Transmembrane Helix	342	363	0.92
Cytoplasmic	364	382	0.94
Transmembrane Helix	383	404	0.93
Non-Cytoplasmic	405	411	0.85
Transmembrane Helix	412	433	0.92
Cytoplasmic	434	443	0.79
Transmembrane Helix	444	466	0.85
Non-Cytoplasmic	467	477	0.78
Transmembrane Helix	478	499	0.91
Cytoplasmic	500	514	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLSRDIEPDP KPWESSPMDK NAAVEQGSIK NPSDGEQTGS DQEESKEDEN LVTWDGPDDP  60
   61 ANPLNWARSK KWICTWIIAT FAFISPLSST MLAPALPTIA KEFKISSSME EALVMSIFLL 120
  121 AYAIGPFLLG PLSEIYGRVV VLQTANMVYL IFNTLCGISR SKQQILAFRF LSGLGGSAPQ 180
  181 TLNGGMLSDC WRAEERGKAI AIYSFAPFIG PVVGPIAAGY IAQHTSWRWI FWATSIFDAV 240
  241 VQILAFIFLS ETYAPKILAT KAKKLRRETG NENLRTKWET PDRSLFQILR KNLSRPFIML 300
  301 FTQPAIQVLG LYRAYLYGLM YLVLATFPLV WEQAYKFSLG IASLHYISLG IGFVIGLQIC 360
  361 APLNDRAYCA LKKRYSHPGQ PEFRIPLMIP AGLLVPIGIF LYGWSTHYRT HWIIPDIGCA 420
  421 IFAMGLIIGF QCVQSYVVDS YPRYAASATG AVAFLRTMAG FGFPLFGSQL YETLGLGWGN 480
  481 SLLGFISLTL GIFAPWGLWH YGEKLRAISG YCSG