YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|90305176, gi|...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.98
Topology Confidence: 0.39
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSSSGTSTS SSSASSSSSS SSSSSSAPEA DPTCDPALLS STRMPERGAT PMNDLSPLIE  60
   61 SNPDDLVADW TQWMRWDEFD TDEISNHVAM QQFSGNNKSD DNSLPQSAAT FSPASAQPAF 120
  121 TFHGGDIPPS QIHTALDSKA MGLQPPFSPT FAFSGHTVPA FVPPPDPLAL SVSVEQSPPP 180
  181 HTSANFPPTP VSAGSGRKRK SSEDDGVPGT VSAGSMSPPA AKSLPSKKRS HNVIEKRYRA 240
  241 NLNEKIAELR DSVPCLRIMY KQRFGGGTTK DDEEEEETIA STNKLNKASI LSKATEYIKH 300
  301 LEMRNKRLEE ENIALKNRLR QLEKSQEQGL AAFPPMPNME PSPSESMVSP ESATSSPPSI 360
  361 FSQNAEFSPE ASPNPLYPPE GLIKVPEYFK RLRPTGPQPH YADSLMSRQG QRYEPGSGDG 420
  421 SGRRGGLANK FMLGTLAGLM VVGTFENQKE ESSDRGLLSV PIHLLAQGFA YARRHIYVIR 480
  481 TNSWQTRALS HFVLTSLFVV GCAFFVYLYL FYSRPCRPKS KLQKSQSTVA GTTEFRRDAW 540
  541 LTSTQTVGVP RHTFFPEWFA VTSRCFEYLL RCLLGWKLYS ILTGISEDDE KGRVKAWDIA 600
  601 LDAQLTGGDA EVSKSRLVLT IFAAGTLPRS LSRMMLKSLH CRILLWRVGS SGSIACKISD 660
  661 HIAGILAKYQ WQLAQQMQKL TPEDHEDALP SHLAYLLQHD CEDVFTDAIV QRASNMIWNR 720
  721 PTQEATDGED SLLDVVVEDS AIRSPLDAIA AWWSSRALQE ALIHSLDVTS ADCGTRRREA 780
  781 FERNLEMALK SAPPTSAAYT RAAAIKALFF DEDRVANINS VLAALPRPKR EPSSSASIFL 840
  841 DSSVPPSVRD EICIAVRCAM IAAILQGQAG AQEPSSSKLS LHNAIELFNR LPIDAVELTL 900
  901 MGFAPLYHLL HMVSMDDRLV PSTSLSSSVC SSDNLSVCMS STQDSAVGTH PLPLPDLARI 960
  961 ASELMYWVQN AYNPISSGFT DCLVDKVVNG CVEACRNAGV DINETKVNKE RKMHEGQISD1020
 1021 LSSPSLSQED DTDSPLASDG PESKSHCVNK TRRQSIRSND TGYGSLSQDE S

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle