YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|119173813, gi...
Protein type:	Transmembrane
Type Confidence:	0.96
Topology Confidence:	0.45
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGEKLMLNLK PLLHALLFVL EMVITMRLAA KFNSYYAERP VLTTMVTNAV LGGIADTVAQ  60
   61 SITAIRSRAK LNHDTRSSEN DFMSIEIAEF HKAKRPRAAG SGLSKRGPTP FDFERLTRFM 120
  121 AYGFFMAPIQ FQWFGFLSRA FPITKRHATL PALKRVAMDQ LIFAPIGLVC FFTFMTIAEG 180
  181 GGRRAVARKF QDVYIPTLKA NFMLWPLVQI LNFRIMPIQF QIPFVSSVGI AWTAYLSLTN 240
  241 SAEEE

Type	Start	End	Confidence
Cytoplasmic	1	11	0.74
Transmembrane Helix	12	30	0.86
Non-Cytoplasmic	31	40	0.74
Transmembrane Helix	41	60	0.63
Cytoplasmic	61	115	0.72
Transmembrane Helix	116	137	0.82
Non-Cytoplasmic	138	160	0.63
Transmembrane Helix	161	181	0.88
Cytoplasmic	182	214	0.53
Transmembrane Helix	215	236	0.68
Non-Cytoplasmic	237	245	0.45