YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|90297960, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASGNSISRR RTHNLLLLSS LLNQRDTASP LTLLLDSLEQ PATPLLREYI RRARLSKSQV  60
   61 TFVSFETFTR PEGVDSFLSA TRKSPNEVAK EVVASFPPRD DKFPDKRTLV IIDSIHPLVC 120
  121 RKGAGQEVNV AEFLSSMLSA ASKRTQISLI VVYHQDMPAP RNSLPYSPSL LSLLTYLATS 180
  181 IFTVHSLAHV LARKAAADRS MVTPVFGLEE ERDGVIIGRQ DSGKRLGKND GIVLEMEHRR 240
  241 KSGRGVVEWY FLPAASQYSQ GQAREVAILL DDHPLYKREE EPGPPTGDEE PVSTFELGLT 300
  301 ERQRRDRENV VLPYFDAQKG EGPGEGGRIL YEMGEEDDFD EEEDEI

Type	Start	End	Confidence
Signal Peptide	1	28	0.91
N-region	1	19
H-region	20	25
C-region	26	28
Cleavage Site	28	29
Non-Cytoplasmic	29	346	0.80