YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|119173096, gi...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.95
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MILPSLFSNQ PGPSCSALFL TVLLGVQAVH AAIPLDLGSP GSIKSAAKQI AGGMVKYYTG  60
   61 YKPGDVPGNL PDPYYWWEAG AMFSALIDYW YYTGDDQYND ITTQAMLHQV GKENNYMPLN 120
  121 QTSTLGNDDQ AFWGMAAMSA AENKFPNPPD DKPQWLELAQ AVLHSQVPRW DDETCGGGLR 180
  181 WQIFSFNKGY NYKNSISNGC FINLAARLAL YTKNETYVEL AEKHWDWMTA IGLISPTSQV 240
  241 FDGSDVVKNC SELSHIQWTY NNGVLMGGAA ALYNFTKGAD IWEKRLNGLI DAAGIFFSKD 300
  301 PPDVMTEVAC EGNGKCNIDQ RSFKAYLSRW MAMTIKLAPY TRDRLLPKLQ ASATAAALQC 360
  361 SGPDNACGLR WTKGEAYDGS TGVGEQMAAL EIIQSNLIDL VAGPADNSTG ISRGNPSAGT 420
  421 GSDPTFELSD ITTGDRVGAG FLTSVVLIGI LGGAWWMVS

Type	Start	End	Confidence
Signal Peptide	1	31	0.99
N-region	1	22
H-region	23	28
C-region	29	31
Cleavage Site	31	32
Non-Cytoplasmic	32	436	0.97
Transmembrane Helix	437	458	0.90
Cytoplasmic	459	459	0.89