YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|90298717, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.42
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYILQQLARL LDQPFFPWKK IIVGFSLGQY LLEGFLSLRQ YRILQQKKPP KVLEGEVSQE  60
   61 VFDKSQAYGR AKAKFGFVSG LYSQIQNLAF IYYDALPKLW AVTGLWLTRY LPERFQGEIT 120
  121 HTLVFVFMFN LITTLLSIPV SYYSTFVLEE KFGFNKQTVK LWVSDMLKGQ MLGVVLGAPI 180
  181 ISAILKIVQK TGTSFFYYLW LFGMFVQLFA ITIYPIAILP LFNKLSPLEP GTLKTGVEAL 240
  241 AQKLQFPLKE LYVIDGSKRS AHSNAYFYGL PWKKHIVIYD TLIEKSEPEE VVAVLSHELG 300
  301 HWSLSHTTKL FGIAQFHMFY IFALFSAFIS NKSLYNSFGF HNEYPIMIGF LLFSDALAPM 360
  361 DAIVKLLMNI LSRKFEFEAD AFAVKLGYSA ELARSLLKLQ IQNLSTMDAD WMYASYHYSH 420
  421 PILPERLGAL GWKGGKVTAK SEDSEKPVKA ADREL

Type	Start	End	Confidence
Cytoplasmic	1	74	0.63
Transmembrane Helix	75	96	0.42
Non-Cytoplasmic	97	122	0.54
Transmembrane Helix	123	146	0.85
Cytoplasmic	147	166	0.60
Transmembrane Helix	167	188	0.86
Non-Cytoplasmic	189	195	0.63
Transmembrane Helix	196	218	0.91
Cytoplasmic	219	309	0.68
Transmembrane Helix	310	330	0.84
Non-Cytoplasmic	331	345	0.63
Transmembrane Helix	346	367	0.76
Cytoplasmic	368	455	0.78