YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|90298566, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	11	0.78
Transmembrane Helix	12	32	0.91
Cytoplasmic	33	40	0.62
Transmembrane Helix	41	58	0.66
Non-Cytoplasmic	59	71	0.47
Transmembrane Helix	72	88	0.46
Cytoplasmic	89	101	0.76
Transmembrane Helix	102	123	0.94
Non-Cytoplasmic	124	130	0.72
Transmembrane Helix	131	153	0.83
Cytoplasmic	154	172	0.89
Transmembrane Helix	173	193	0.90
Non-Cytoplasmic	194	200	0.90
Transmembrane Helix	201	225	0.92
Cytoplasmic	226	244	0.94
Transmembrane Helix	245	265	0.94
Non-Cytoplasmic	266	295	0.77
Transmembrane Helix	296	315	0.60
Cytoplasmic	316	324	0.43
Transmembrane Helix	325	345	0.91
Non-Cytoplasmic	346	362	0.45
Transmembrane Helix	363	384	0.91
Cytoplasmic	385	404	0.49
Transmembrane Helix	405	430	0.69
Non-Cytoplasmic	431	1111	0.83

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAWDHLDIDK PHVAYMILGG FTSLFMLCSL FVKEKLYIGE ATVATLCGVI FGPHAANLFD  60
   61 PISWGNVDKI TLECSRIVLV VQCFAVGVEL PKSYMERHWK SVALLLVPVM TWGWLATSLF 120
  121 IWWMVRPLTW LESLICAACV TATDPVLASS VVGKGKFAKR VPKHLRDLLS AESGCNDGMA 180
  181 FPFIYLSLYI LAYQPSTNKV ALHWICITLL YECILGGFLG FMIGYAGRHA IRLAERKGII 240
  241 DRESFLVFYF VLALFCAGTG SLLGMDDLLM GFSAGVGFSN DGWFTEKTEE SHVSNVIDLL 300
  301 LNLAYFVYFG AIIPWQEFDA PEIGLPVWRL VIIAIFVIFF RRIPIMLLLK PVIPDVKTWR 360
  361 EALFAGHFGP IGVGAIFACI LARAELETHS TQPLDGLPGK GSPNYMVIQL IWPITTFLVI 420
  421 SSILVHGSSV AVFTLGKRIN TLTITMSYTT ANDEGPSWMN RLPRIQSQSK ASLSLRKESL 480
  481 DSSNEALSQF PPGTLGPIGI PGNLLRRQRE GEQPSQPGSR ASSRKPTRRK KLGAGGPISQ 540
  541 SAIMPQRRTE PVTADETIDL EEQPIDQAVE AERPRIESGT EGEEEPFRRP ELEVYQEGDN 600
  601 MIIEDEEGNV LETTDISHLS PEQREQEIMA QHKRIREDPS GFFAKAKGLP HEQTEGEAIK 660
  661 KAIGKDLARP LKQFRNHLPW NNGKEKDAEA GGEPSKKKTK KERKRRSARA YQFANTIIVE 720
  721 DEDGEVIKKY TIPGHKTTKK PTIEGEPSTK AASGARKWSV ARVGTWIGRG DGMASAAKPK 780
  781 DEEEASSDEE RLRFTVPGKD GRGHRLGGRR MTKEDFIREI QRLEPQTRKE IYDEDIPGQL 840
  841 KPDTGDEQPE TTRRAQGGQV EGQETPPCPT PAEYTPLIGQ EESIGREQEV PAPDVAATLA 900
  901 QYAGPDTSAA EARRRRLLGP RESPPPSPTS SVRRRRDSED DGTRRIPPAE RRQLAGLPPS 960
  961 QPASATSRAK DIDPETGETH VERQRRLAAL GQLPDTGDDE DAEGRGRHRG DGHSDSEDDG1020
 1021 RPRRVKGKVS FADGTRPAKT RPGAMAVHPP RGGSSGGAPT AEQTSSQPSS SSSSGNGNGN1080
 1081 GSSSGNGDGN GNGDSRRHVS RISWGGERGR S