YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|90298550, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.64
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MALAASDPPG LYKGRSPRSF SETNVAPHSK RRRARSVFRC WGNFCLKHTW VIPLVLLTVI  60
   61 LSAYAVNPND SNPIHQLIFL SYPLPPETPD GPVMYGKGPA DMAFVVFYTI VLSFTREFLM 120
  121 QRMIKPLARR CGIKGKAKTS RFMEQFYTAV YFAIFGPYGL YVMSRTKIWY FNTTAMFEGF 180
  181 PHKTHTADFK AYYLLEASYW AQQAIVLVLQ LEKPRKDFKE LVGHHIVTLA LIALSYRFHF 240
  241 TYIGLAVYIT HDVSDFFLAT SKTLNYLDSA IMGPYFAMFI AIWIYMRHYL NLRIIWAVLT 300
  301 EFRTVGPFEL NWETQQYKCW ISQYITFALL SALQAINLFW LFLILRIAKR YLLNNIRQDE 360
  361 RSDNEEEEEE VEDTPHSDKT NNGSTTVPTI LLNGNSPTSV RRRNADKENE VSNGVTNGRA 420
  421 TGSTAHSHAE SSTPTMNGKK

Type	Start	End	Confidence
Cytoplasmic	1	43	0.96
Transmembrane Helix	44	66	0.88
Non-Cytoplasmic	67	99	0.96
Transmembrane Helix	100	120	0.91
Cytoplasmic	121	145	0.90
Transmembrane Helix	146	162	0.78
Non-Cytoplasmic	163	220	0.57
Transmembrane Helix	221	250	0.64
Cytoplasmic	251	263	0.34
Transmembrane Helix	264	286	0.85
Non-Cytoplasmic	287	323	0.50
Transmembrane Helix	324	344	0.91
Cytoplasmic	345	440	0.75