YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|90298498, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	19	0.99
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	184	0.99
Transmembrane Helix	185	206	0.95
Cytoplasmic	207	215	0.86
Transmembrane Helix	216	237	0.90
Non-Cytoplasmic	238	261	0.78
Transmembrane Helix	262	282	0.86
Cytoplasmic	283	290	0.91
Transmembrane Helix	291	314	0.88
Non-Cytoplasmic	315	321	0.78
Transmembrane Helix	322	342	0.93
Cytoplasmic	343	366	0.87
Transmembrane Helix	367	389	0.92
Non-Cytoplasmic	390	407	0.93
Transmembrane Helix	408	428	0.92
Cytoplasmic	429	534	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRWQLWGFLT ALLAINGLAN DVELNQDDSR RQQCSGMYGK KAWGGDVDPF IHVALEKLPP  60
   61 KEPSPLMSLI IFEWKDEGLI GRFAPGDKEK FQKETICDRH NVEAGLCDEQ SLGAFILEPN 120
  121 ATSRAQSALI SMAVNLTSAK PIKYPIKKTG FYCVSTYAFT GDDYKGIVTF RNAYGELSAP 180
  181 QIPKLAFYGG LTILYAVIGI FWAFLYVQHR HDILPVQNYI TAILVFLVVE QLMTWGFYDY 240
  241 QNRHGMNAMA KVLMFIVAVL NAGRNSFSFF LLLIVCMGYG VVKPSLGRKM IYVRFLAIGH 300
  301 FVFGVIYAVA SLSIAPESAG PLVLLVVLPL AATLTAFYVW TLNSLSATMK DLVERKQRVK 360
  361 AMMYKKLWWC ILGSIMVIFG FFFINSFLFA SKRVVDYIPE HWKTRWFVLD GWLNIVYLFD 420
  421 IAFIAYLWRP TMNNRRFAMS DEIAQDDDGF EIRSLTSSLD DEERVGSNAN NRPIGGAHAE 480
  481 HSPAPAAAES LSHPQQARHS IDADHFAVGE EDRWSDDESP RNSTERKGLM HKDD