YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|119178708, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAPAVAADA SKARPAGADI KKPHITETPM TWSNWHKHVN WLNVTLILLI PLYGCVQAFW  60
   61 VPLQLKTAIW AIAYYYMTGI GITAGYHRLW AHCSYSATLP LRIYLAAVGG GAVEGSVRWW 120
  121 ARDHRAHHRY TDTDKDPYSV RKGLLYSHIG WMIMKQNPRR IGRTDITDLN EDPVVVWQHR 180
  181 NYLKVVITMG LIVPMLVSGL GWGDWWGGFI YAGILRIFFV QQATFCVNSL AHYLGEQPFD 240
  241 DRNSPRDHVM TALITMGEGY HNFHHEFPSD YRNALEWYQY DPTKWIIWVW KQVGLAYDLK 300
  301 QFRANEIEKG RLQQLQKKID QRRAKLDWGI PLEQLPVMEW DEYVEQAKNG RGLIAVAGVV 360
  361 HDVTDFIKDH PGGKAMINSG IGKDATAMFN GGIYNHSNAA HNLLSTMRVG VIRGGCEVEI 420
  421 WKRAQQENKD VEFVRDANGK RIIRAGEQVT KLPEPVPSAG AA

Type	Start	End	Confidence
Non-Cytoplasmic	1	38	0.52
Transmembrane Helix	39	61	0.90
Cytoplasmic	62	67	0.47
Transmembrane Helix	68	90	0.84
Non-Cytoplasmic	91	99	0.49
Transmembrane Helix	100	121	0.73
Cytoplasmic	122	184	0.74
Transmembrane Helix	185	206	0.84
Non-Cytoplasmic	207	211	0.43
Transmembrane Helix	212	234	0.57
Cytoplasmic	235	462	0.53