YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|119178282, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MACSSPSMTV ESHADREDTG ATSGFFSPTE ILRNRRRRHS FHSSRRLSCD YDADAIFLRV  60
   61 ELFLADLERR LQWLEDYRQS HVVDIDSGLK RAYAALQAVR DKCSHASGEL MGGGKRRARI 120
  121 VVETMEEQYN HALATKETLE QKAQASMRLM ESFLSELEAS VHAVKDRGIY VAIDEGWRAV 180
  181 DSGLHHARVV LDEGMERARH AQVALRESID RAIQLAQEKR LITYADLPHP WRVNPHILDG 240
  241 YRFTTSKIEC VTSVFTFSNE LVNIWSHLIG LIIVLAVALY FYPLSPNFSL STKADVAIAA 300
  301 IFFIAACKCL VCSTVWHTMN GIASQSLMER FACVDYTGIS FLVAASIVTT EYTAFYCEAL 360
  361 SRWIYILMTS SLGIAGIILP WHPTFNRADM AWARVAFYVT LALTGFAPIV QLSLTRGLAW 420
  421 SLYFYAPIMK SLLVYLTGAC IYASQVPERW RPGFFDYFGG SHNIWHIAVL GGILFHYHAM 480
  481 QDLFAGAFVR AQGECPSLAY

Type	Start	End	Confidence
Cytoplasmic	1	262	0.66
Transmembrane Helix	263	284	0.91
Non-Cytoplasmic	285	295	0.59
Transmembrane Helix	296	318	0.90
Cytoplasmic	319	331	0.60
Transmembrane Helix	332	355	0.81
Non-Cytoplasmic	356	362	0.58
Transmembrane Helix	363	383	0.94
Cytoplasmic	384	390	0.61
Transmembrane Helix	391	414	0.85
Non-Cytoplasmic	415	421	0.57
Transmembrane Helix	422	444	0.83
Cytoplasmic	445	457	0.56
Transmembrane Helix	458	480	0.80
Non-Cytoplasmic	481	500	0.62