YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|119177296, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.52
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSEPASVPRG KPDPDVGDEH AVVESADTVQ AMLKRRADVR KSSNSNELTR TSSSSSGSSN  60
   61 SYQEDWEPFP PLDKLTVLDL LSNLALPQKL EKWQNTLTAQ KEKVKRQQEK FKSTSLQAKE 120
  121 RVVGEWRKRV PNSDEQLEKY RRRMKDSVER LGARWNDTAT VTAREKLSFI AGVLNIFISG 180
  181 YLIGAYPTYF HYWFTLQILY FMPIRFYTYH KKGYHYFLAD LCYFVNLLTV LSVWVFPRSK 240
  241 RLFLSTYCLA YGNNAVAIAM WRNSMVFHSL DKVTSLFIHI MPPVTLHCIV HLTPPGTLLK 300
  301 RFPAAYNIKF SAPGSPEHYS LGAMMLWASI PYAVWQLSYH FLITVRRREK IAAGRPTSFT 360
  361 WLRKSYAKTW IGKFVLSLPE ALQEPAFMLI QYTYALLTLT PCPLWFWYRW ASGTFLFVVF 420
  421 SWSIYNGATY YIDVFGKRFQ NELEQLKKDV SKWQPSSDGT ITPDGNGSMP KSLDDLVVGM 480
  481 PDNARKAASD VSSRLEGQLA ATQEDASTST RVDAKS

Type	Start	End	Confidence
Cytoplasmic	1	168	0.97
Transmembrane Helix	169	193	0.83
Non-Cytoplasmic	194	215	0.72
Transmembrane Helix	216	236	0.94
Cytoplasmic	237	242	0.71
Transmembrane Helix	243	261	0.73
Non-Cytoplasmic	262	320	0.59
Transmembrane Helix	321	343	0.82
Cytoplasmic	344	386	0.66
Transmembrane Helix	387	407	0.52
Non-Cytoplasmic	408	409	0.40
Transmembrane Helix	410	432	0.75
Cytoplasmic	433	516	0.73