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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|119185108, gi...
Protein type: Transmembrane
Type Confidence: 0.88
Topology Confidence: 0.47
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSRHIGRSLF GTTWRSTAQF FPSTGQPGPT CSSSRQTALA RRNYSSRGTT ATPTPVGCRN  60
   61 SRLNYAAFGF NRMSANTKSP AQFAFFIPRQ LGVRHTKFRD SRKIYTPILY AWKRNLHTSE 120
  121 ENFASQKSSK DDATNRSQEP SQRSAKSDPE AEPHRTEAFK GGSQQHTPNS HHIYLIDRFS 180
  181 HVRSPTREEL LAAATGFWSR LKIRFKWFSI RSVRPFNIDE IGAFFSWVLL GHVLWIFLGT 240
  241 TTFFSLIIFA INTVFAQETL ARWVGNYLTK SSGIKVVFES AIVPKWGDGV ISFKNVFVSR 300
  301 RPGQGGGNVS KGSSKTAAAA ALHSIVPSVQ QREDYGGEEE DTNYTQFDVT IDTVNVTLSF 360
  361 TKWFNGKGLL RDVEVKGIRG VVDRTHVYWP DEPIDPKSYR HEHNPGDFEI DSFRMEDVLV 420
  421 TVYQPNNFRP FPVSIFTCHL PQLRRQWLFY DFLSASIMSG SFDNSLFTIH PRQTHSYTGA 480
  481 QLNNGVEENG KPSPWKKHSR IRIDGLNIDH LNRGVEGPFS WIHEGNVDIV ADIMFPAEND 540
  541 ESLAKVMADF YDRLEATVTS NRYQSLAESL PTNVEDGTAN LLSAASKNDK RFVVTDLRIH 600
  601 LNNVRAVVPL FTRDLSYINN ALIRPIVAYI NSKRTFIPIQ CRLVKRVSDF DGSWTIFDSG 660
  661 LMDDLSAETY EAFARDVVDE QARKRRLKKV GLWSLQLAAQ AIFMGMAGNI A

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle