YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|119184844, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.84
Transmembrane Helix	7	24	0.95
Non-Cytoplasmic	25	31	0.74
Transmembrane Helix	32	52	0.92
Cytoplasmic	53	63	0.78
Transmembrane Helix	64	83	0.88
Non-Cytoplasmic	84	139	0.91
Transmembrane Helix	140	162	0.81
Cytoplasmic	163	172	0.84
Transmembrane Helix	173	193	0.95
Non-Cytoplasmic	194	203	0.79
Transmembrane Helix	204	225	0.91
Cytoplasmic	226	233	0.78
Transmembrane Helix	234	250	0.88
Non-Cytoplasmic	251	270	0.83
Transmembrane Helix	271	290	0.74
Cytoplasmic	291	297	0.53
Transmembrane Helix	298	322	0.81
Non-Cytoplasmic	323	358	0.79
Transmembrane Helix	359	381	0.85
Cytoplasmic	382	401	0.80
Transmembrane Helix	402	422	0.76
Non-Cytoplasmic	423	438	0.72

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MWIVRLISSA FFLTAIVLSI PLAFDVGGRT CGLAYSLSLA TFYFLLSVLK LTTPDNSRVR  60
   61 YALIILARST QWIVAPILLI WSLNKFSVDS DNSSGWVERT FNGKRAQDTS IHEWIFGANG 120
  121 LIETVSLGSW DKLLGWSTPV FQLAEGFCSL LVIQAAGQIT RWLVNRGGRS DSWMISLLVM 180
  181 SASVISSSIY FLWRVLRFPE ISSVDSALIG VAITCAVFLC AWGIGSGRGN PVESSLLFAY 240
  241 IVLCIYQIFT DYQPSTPLET PSVSSQPDFP PLPPIIMASY TTLMHTLSAL PSIIHTAFNI 300
  301 VSAAFSAISP SVLISLLYRL FVLYASTRII PAVRESGARA LSQEASLDDS DGAGQFLGFL 360
  361 SWFSPSILIA VYTSLLMQHF AAQSTGANGE WWKSAGAMGG NFWRWVNLGC TMGLYAVELW 420
  421 LGKQDDIDGG LTGHWKTD