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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|119183744, gi...
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.62
Topology Confidence: 0.54
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSWIQRQTN SQYAQLAGAA LLSGTAVAGA ILGYQAIKRK AAVEELKKSI PGLDDSNRAL  60
   61 KLSEFGVAPP PSAQQRKEDE HRAAIARRAQ DGYYDEEKLR SSFIIVVGCG GVGSHASAAL 120
  121 ARSGVGRIRL IDFDQVTLSS LNRHAVATLA DVGMPKVRCL QKRLEQIAPW VRFDPQNTLF 180
  181 AASAADQLLG PWSMPGDDNT SKPDFVLDCI DNISSKVDLL RYCHSQGIPV ISSMGAGCKS 240
  241 DPTRILVGDI STSLEDPLSR STRRRLKALG VTSGIPVVYS TEKPGPGKAA LLPLPEEEFT 300
  301 KGEVGELSVL PDFRVRILPV LGTMPAVFGY TLANHVICDI AGYPNDYNSG IKGREKLYDS 360
  361 VLGALQGTEE RLAKHDNKDP VGLRIPITKD DVGYLLEEVW RGKSVVSGLT TRLALVRWER 420
  421 PGEGFGADPK WDQHGQKGVK MRLRDLVCMT KEEAQRHERE VLKGGKKPAE LYDESVLIKV 480
  481 QQRMREEEEF ESRIIIQAFE RASRQPLLNL ASNVWFNKPL DHNKPSMSGS NLILALITAP 540
  541 RFRRYLIVYL VLCCICGLGW VGIASPRLKE HKEVLRALDV NNRQRVGGWF GSNSLPKFTD 600
  601 LVHLEALDER LLPSARQVDS LLDKASFNRQ TDHLIFTGNI ITNGPKSVET VQLARKYNAS 660
  661 CVRGNNEDRI LLYRHELLTT GVLTGPNPRP NAKFESGGSA FEAGKTKPPE GDQEILPYGD 720
  721 YKEHVLAQKL SDDDAAWLHK CPVILKVGQI NDLGEVVVVH GGLVPGVELE NQDPLAVMTM 780
  781 RTLDVDTHVP SPRAKGMDWA KIFNKQQSLT VSTSKNPPSS QLTTVIYGHT PHRSPAIRRF 840
  841 TKGLDTGCVR GGKLTALIIT EGGTTRIEQV RCKNYVSKRR 

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle