YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|119182974, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.48
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLELLQQFP RPTLDRPFGV ELWPIFDKAF SAVAGYSATD FKFVQGETPM STLKMTATAL  60
   61 ISYYVIIFGG RELMRNRPAM KLNGLFMIHN LYLTLASGIL LALFIEQLLP TLWRHGVFYA 120
  121 ICDHRGGWTK QLVILYFLNY ITKYIELVDT VFLVLKKKPL TFLHTYHHGA TALLCYTQLI 180
  181 GLTAVSWVPI TLNLMVHVVM YWYYFQSARG VRVWWKQWIT RLQIAQFVID LGFVYFASYT 240
  241 YFASTYFPHF PNAGKCAGEE FAAFSGLIIL SSYLVLFISF YFATYKKTGK GGRPRRNTGK 300
  301 QAAIAMKNLE VPPVGLQPKT NGVSNGNANG SIATNGTAVS SARANGPVTR SRKA

Type	Start	End	Confidence
Non-Cytoplasmic	1	50	0.48
Transmembrane Helix	51	70	0.70
Cytoplasmic	71	85	0.82
Transmembrane Helix	86	105	0.92
Non-Cytoplasmic	106	182	0.79
Transmembrane Helix	183	205	0.86
Cytoplasmic	206	221	0.92
Transmembrane Helix	222	243	0.89
Non-Cytoplasmic	244	261	0.91
Transmembrane Helix	262	285	0.92
Cytoplasmic	286	354	0.99