YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|240109234
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	32	0.97
Transmembrane Helix	33	55	0.90
Non-Cytoplasmic	56	76	0.91
Transmembrane Helix	77	101	0.84
Cytoplasmic	102	119	0.85
Transmembrane Helix	120	139	0.93
Non-Cytoplasmic	140	144	0.88
Transmembrane Helix	145	167	0.94
Cytoplasmic	168	174	0.89
Transmembrane Helix	175	195	0.93
Non-Cytoplasmic	196	243	0.82
Transmembrane Helix	244	263	0.94
Cytoplasmic	264	284	0.75
Transmembrane Helix	285	306	0.89
Non-Cytoplasmic	307	359	0.81
Transmembrane Helix	360	380	0.86
Cytoplasmic	381	415	0.94
Transmembrane Helix	416	435	0.89
Non-Cytoplasmic	436	440	0.68
Transmembrane Helix	441	459	0.90
Cytoplasmic	460	479	0.84

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGLRFLDLI KPFTPLLPEV AAPETKVPFN QKLMWTGLTL LIFLVMSQMP LYGIVSSDTS  60
   61 DPLYWLRMML ASNRGTLMEL GITPIISSGM VFQLLAGTHL IDVNLDLKTD RELYQTAQKL 120
  121 FAIILSFGQA CVYVLTGLYG QPSDLGAGIC VLLIVQLVVA GLVVILLDEL LQKGYGLGSG 180
  181 ISLFIATNIC ESIMWKAFSP TTYNTGRGPE FEGAVIALFH LLLTWKDKQR ALHEAFYRQN 240
  241 LPNIMNLLAT LIVFAAVIYL QGFRVEIPVK SSRQRGMRGS YPVRLFYTSN MPIMLQSALC 300
  301 SNIFLISQML YSRFSDNLLV RLLGVWEPRE GGSAQLHASS GIAYYMSPPL NFKEALLDPI 360
  361 HTAVYVAFML VACALFSKTW IEVSGSAPRD VAKQLKDQGL VMAGHREQSM YKELKRVIPT 420
  421 AAAFGGACIG ALSVASDLLG ALGSGTGILL AVTIIYGYFE IAAREGDFGA GLKGLVPGN