YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|90300648, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MESSWDCTLE TCPIEYAVFG YRPSLPANII FTALFGLCAL TQVAEMGIFR SYTFSIPVIL  60
   61 GGICEVVGYV GRILLYDNPF SQDAFLIQIC CLTIAPAFYS AAIYFCIADI VKLLGPEASR 120
  121 LKPHHYAWIF IPCDVISLIL QGAGGGIASV ASQENEDPTT GTNVMVAGLV FQVFSLLMFI 180
  181 LLTLEFLWRV RNKRPKSISD ESIKEKSSSR HQKFLLFGIP FALAILCIFI RCAFRVAELS 240
  241 NGWTGELIKH EDTFIALEGA MIAVSAVALN ISHPKLLSS

Type	Start	End	Confidence
Non-Cytoplasmic	1	24	0.80
Transmembrane Helix	25	44	0.84
Cytoplasmic	45	52	0.73
Transmembrane Helix	53	75	0.84
Non-Cytoplasmic	76	83	0.93
Transmembrane Helix	84	107	0.93
Cytoplasmic	108	125	0.92
Transmembrane Helix	126	148	0.91
Non-Cytoplasmic	149	164	0.89
Transmembrane Helix	165	188	0.88
Cytoplasmic	189	213	0.96
Transmembrane Helix	214	234	0.96
Non-Cytoplasmic	235	253	0.91
Transmembrane Helix	254	273	0.91
Cytoplasmic	274	279	0.81