YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NCB5R_COCIM
Protein type:	Transmembrane
Type Confidence:	0.71
Topology Confidence:	0.41
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSWTSKENI NGVYIPSALL IFGTTIIKKE WIAYATALAV VLSAWKLFSN KPRKVLNPTE  60
   61 FQNFVLKDKT IVSHNVCIYR FALPRPTDIL GLPIGQHISL AATIPGQSKE IVRSYTPISS 120
  121 DDDAGYFDLL VKSYPQGNIS KHLTTLRIGD KMKVRGPKGA MVYTPNMVRH IGMIAGGTGI 180
  181 TPMLQVIKAI IKGRPRNGGN DTTQIDLIFA NVNPDDILLK EELDQLAKED DAFRIYYVLN 240
  241 NPPEKWNGGV GFVTPDMIKA KLPAPAGDIK VLICGPPPMV SAMKKATESL GYKKANLVSK 300
  301 LEDQVFCF

Type	Start	End	Confidence
Cytoplasmic	1	9	0.55
Transmembrane Helix	10	27	0.41
Non-Cytoplasmic	28	308	0.57