YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|90304581, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.43
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAPPPSPSLP LGERLKQLAQ RLQFGWFVGH LALVLAVFRY LLSVLTFNST SRMAQASYRF  60
   61 AFIAAAATYG IVVYKSHIAR GDMKGNVPAL VMKLAGDENV QYLLIALVWL YARQITIAVL 120
  121 PFAIYSFFHV ATFTRSHLIP TIQPPKEPEP GAGSPSRQGA KQSPLSESIG RFIKQYYDTS 180
  181 MALVASLELS VLIRLIGTAL TFSSGSWVLL AVYFMFFRSR YTSSKYVQGV VAHSSQRIEA 240
  241 SISHQSTPPV VRQGWQVFKD FARRVYEFTD VNRYIGAYSP AGAKKPQAIL RIECCEAPEV 300
  301 IADADTSNRM VLFEPSSGVE KLTLQRWRVE YKFTKMFLGK KEEVKFAIPE IIYNPSLALS 360
  361 PHVILLGLLF ADWVFTHLDS KRVLTSAEQL LYLNILDDVY KLLLHLDPAL KDVSIFQKSV 420
  421 WTMDKIKISD IEALIYSTIQ PWIKCIRALS TFHEILQAYN LDYGAGKALN NSINQLPEIQ 480
  481 EFIQKQNKLT KLLGRSIERH TETVKYKLYK QIITNWQVSS KSLQDEMLQE TKDIHAVAAY 540
  541 CLFKKGDTCQ LLYFKRPTPA AVLAEGAS

Type	Start	End	Confidence
Cytoplasmic	1	21	0.74
Transmembrane Helix	22	43	0.88
Non-Cytoplasmic	44	55	0.65
Transmembrane Helix	56	78	0.82
Cytoplasmic	79	109	0.61
Transmembrane Helix	110	131	0.77
Non-Cytoplasmic	132	190	0.59
Transmembrane Helix	191	217	0.84
Cytoplasmic	218	356	0.59
Transmembrane Helix	357	374	0.43
Non-Cytoplasmic	375	568	0.79