YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|119189209, gi...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.86
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKSQEPSQP KVLARACQFC RARKIKCDTQ RPSCSSCINQ KKECVYILEV PKRRPSTAIV  60
   61 NALQGEKRAL EDVVLRLKRA SPDEVAGILE SIPIVDGNVV VKTISPALAV LQEPKSATRT 120
  121 GKRHQSDDDG AGISSDEDLD VLPFLSVGEG GKVDTFGPSS ALQGPTRPVI PTESPVAEHV 180
  181 RNQLIANAIL QRQREHDLCY RQDVFGVPLE LAKHLLDLHW NRQHHTFLLT YRPAIMRDLM 240
  241 QNGPYCSEFL INAIFACSSK YSQRIEVRDN PVDSTTSGLR FFARCDQLLA EQSLLNASSI 300
  301 ATLVGLLLLG STYNARGDTS KGWLYTGYAL RMVYDLGLHL DYKATTANAE DIEIRRRVFW 360
  361 GAFICDKLQS LYLGRPMTIH LRDVHVSRNF MDTMEEKELW TPYVDPMFPT ENMSTIPLTP 420
  421 TPIHSVSTFQ QLCLLSRIMT KIINRFYVVG ATAANARASL QSIDDALISW KDSLPGDLKF 480
  481 EPWSGNPATS QARPAPNVMI LNALYYSLVI LLHRPFISDG HLRSAVPPAS SWKRCSTAAR 540
  541 NITSIVLAYQ ATYTLRGAPY LMSYAVYVAC TIHVRNAAAT ERDNPGENSS LLSASLHSLD 600
  601 ELSLPNVGVS KPARIIRKIM AANGLQLVSD PPGVDIHSPS SLDLDAILRM FPSRSPVTGD 660
  661 LNHGDTFSSG FSMPNSHYAQ EDLLYGFMDG QTHSFPDFTT NGVFRMVASA PPVFPHGVAI 720
  721 LLQPATAPWI TEKMDKSSEV GIGGEVTEKR DEFVLPELQE YHDLQAKFDE NRVKSLLRRV 780
  781 DVRLMPPLAI LYLVAFIDRS NIGNARLQGL EKDLNLSPQQ YAWCLTIFFF PYALFEVPSN 840
  841 IMLKLLRPSI WLTIIVFGWG IIMTVMGLCQ NYSALLACRF FLGVFEAGLF PGCTFITTAW 900
  901 YKRFEVQYRV ALFYSAASLS GAFSGLLAFA IGNMTGVRGY SGWRWLFILE GIATCVVASI 960
  961 CYFFIPDSPG SAKWLSPEEA RFLELRLQFD GHDKGYKEGG FEWKYLIQGF TDAKVYIGTI1020
 1021 IFGAICICTY ALSYSLPTMI NLLGYSAANA QLLTIPVYAF GCIICVLNSV LSDRYKHRAA1080
 1081 FIIAPMGMTM IGLIIGMAVD PTKLPGVIYF ALFLVAGGIF SGIPTTVAWT SNNLAGQWKR1140
 1141 AVGMALQFTL GNLVGGTVGS NIFLVKEKPK YMTAYSVLFS VTACAFLSGW ALLFCIRRWN1200
 1201 AQKAALVEQA EREGRDLDAE CKDLGDKNPY FKYTL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle