YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|119186113, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTGRGKKQKA SEPSPVQYDG ASVDTNGTIR KGSKHKGVSS TQGEQKENIF LFWPNIIGYI  60
   61 RVVLAIASLY YMPLHPRTCS LLYSISCLLD ALDGYAARFY NQSTTFGAVL DMVTDRCTTA 120
  121 CLLVFLSSAW PRWAILFQGL ISLDLASHYM HMYATLTMGG SGQSHKKVDS SRSWILYQYY 180
  181 NNKMVLFVFC TMNELFFIGL YLLSFSSPTL SPSLLQPVGD GTSAGSGQPG TPAMPPISTL 240
  241 FASPWSAGAL ELARANKMDS FWPWVITGIS APIMAAKQFI NIVQMVKASK WLAEGDLARR 300
  301 RQLGLSKAK

Type	Start	End	Confidence
Cytoplasmic	1	49	0.81
Transmembrane Helix	50	72	0.76
Non-Cytoplasmic	73	117	0.44
Transmembrane Helix	118	152	0.55
Cytoplasmic	153	183	0.62
Transmembrane Helix	184	205	0.90
Non-Cytoplasmic	206	232	0.76
Transmembrane Helix	233	250	0.51
Cytoplasmic	251	260	0.50
Transmembrane Helix	261	280	0.65
Non-Cytoplasmic	281	309	0.56