YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88698713, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	11	0.76
Transmembrane Helix	12	31	0.58
Non-Cytoplasmic	32	35	0.58
Transmembrane Helix	36	55	0.83
Cytoplasmic	56	96	0.86
Transmembrane Helix	97	122	0.85
Non-Cytoplasmic	123	142	0.83
Transmembrane Helix	143	162	0.94
Cytoplasmic	163	170	0.70
Transmembrane Helix	171	190	0.93
Non-Cytoplasmic	191	196	0.80
Transmembrane Helix	197	219	0.92
Cytoplasmic	220	238	0.92
Transmembrane Helix	239	259	0.92
Non-Cytoplasmic	260	283	0.83
Transmembrane Helix	284	303	0.94
Cytoplasmic	304	322	0.89
Transmembrane Helix	323	344	0.92
Non-Cytoplasmic	345	362	0.82
Transmembrane Helix	363	385	0.84
Cytoplasmic	386	395	0.90
Transmembrane Helix	396	418	0.87
Non-Cytoplasmic	419	423	0.67
Transmembrane Helix	424	445	0.89
Cytoplasmic	446	459	0.97
Transmembrane Helix	460	479	0.95
Non-Cytoplasmic	480	494	0.85
Transmembrane Helix	495	516	0.93
Cytoplasmic	517	540	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNPDVTAKSP PGLLRSSAVV GTMTMLSRVL GLARDVILAA VIGASANADA FFIAFKIPNF  60
   61 LRRLFAEGAF AQAFVPVLAE CRENGGQAAV RALVDRVAGV LGGVLFVLTT LTLLAAPLVA 120
  121 GVFAPGYIAQ PQKFALTADL IRIAFPYLML ISLTGMCGAI LNSYGRFAVP AFTPVLLNLS 180
  181 LIGAALLAAP HFSEPAFALA WGVLFAGLIQ LLFQLPFLYR LDLVPRPRWE PRHPGVRQVM 240
  241 TLMIPALFGV SVSQLNLLFD TVLASFLPTG SVSWLYYSDR LTELPLGVFA IAVATVIMPT 300
  301 LSAQKSAARE DDYARTLDWA VRSVLLVGVP ASLALLILAE PILISLFHYG ALSERDIAMS 360
  361 ALSLRAYSLG LCAFMLIKVL APGFYARQDM VTPVRIGIRA MVANMVMNLV FVVPLMFYCG 420
  421 IGHVGLALAT SLSAFLNAGL LWRGLRREGV YRFDPQWRRY LFRLFFACVG MVLVLIYVTP 480
  481 HETLWLDWTW MQRGLRILGV CGVGALSYLL LLWLAGMRPA DVRAPSFSTL KSDGDRGGSA 540
  541