YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88698686, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADQDPKNET ADVPASKEDR HDEAAPLAPV NDGNDGNEGK ETTGPASLLP DSLGEAASSI  60
   61 ENLIEDHEEE VSENGRTVKR RGVYLLPNLF TTGALFCGFY AVVAAMRGDY ETAPIAILFA 120
  121 LVFDGLDGRV ARMTNTSSKF GAEYDSLADM VSFGVAPALV MFSWALGDLG KAGWSAAFVY 180
  181 VACAALRLAR FNTQVGVGDP NFFMGLASPA AACIMACTVW VCQDQGWVGA ALPLELAVLV 240
  241 AALTGTVAIL MVVNVPYHSF KGFDLHGRVP FVAILAVVLV FGLVTVDPPK ILLLASLAYA 300
  301 LSGPVEQLRR WQK

Type	Start	End	Confidence
Cytoplasmic	1	83	0.99
Transmembrane Helix	84	104	0.95
Non-Cytoplasmic	105	111	0.81
Transmembrane Helix	112	131	0.87
Cytoplasmic	132	145	0.86
Transmembrane Helix	146	166	0.89
Non-Cytoplasmic	167	171	0.81
Transmembrane Helix	172	191	0.85
Cytoplasmic	192	201	0.78
Transmembrane Helix	202	222	0.96
Non-Cytoplasmic	223	230	0.78
Transmembrane Helix	231	255	0.85
Cytoplasmic	256	264	0.75
Transmembrane Helix	265	286	0.87
Non-Cytoplasmic	287	290	0.70
Transmembrane Helix	291	308	0.48
Cytoplasmic	309	313	0.47