YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88701939, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.84
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATTATSELF TWSGTDKNGR QTKGEINAPS QAMARAQLRQ KGINPRSVRR KPKPLFSARK  60
   61 KPIKPADIAI FTRQMATMMK AGVPLVQSFD IVGDGLENPS MKELVGGIKN DVSAGGGLAL 120
  121 SLSKHPRHFD ELFCSLVGAG ESAGTLETML DRVATYKEKT EQLKAKIKKA LTYPTAVIVV 180
  181 ALVVSGILLV KVVPQFAETF SSFGADLPAF TLMVLGLSDF MQAWWFIIVI AIVASVYAFK 240
  241 EARLRSQKFS DAIDRIMLKL PIFGDIVHDS VVARFSRTLA TTFNAGVPLV DALESTAGAA 300
  301 GNAVYSAAIL QIRDDVTTGS TLYNSVKSTG LFPNMLLQMI SIGEESGQLD EMLDKVATHY 360
  361 EEAVDNAVDS LSSLMEPMIM SVLGVLVGGL MIAMYLPIFM LGSVI

Type	Start	End	Confidence
Cytoplasmic	1	170	0.98
Transmembrane Helix	171	193	0.91
Non-Cytoplasmic	194	219	0.92
Transmembrane Helix	220	239	0.94
Cytoplasmic	240	378	0.97
Transmembrane Helix	379	401	0.90
Non-Cytoplasmic	402	405	0.84