YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88703640, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	16	0.51
Transmembrane Helix	17	38	0.93
Non-Cytoplasmic	39	44	0.44
Transmembrane Helix	45	76	0.72
Cytoplasmic	77	84	0.41
Transmembrane Helix	85	106	0.90
Non-Cytoplasmic	107	113	0.39
Transmembrane Helix	114	136	0.86
Cytoplasmic	137	142	0.41
Transmembrane Helix	143	162	0.81
Non-Cytoplasmic	163	166	0.42
Transmembrane Helix	167	188	0.76
Cytoplasmic	189	212	0.65
Transmembrane Helix	213	237	0.73
Non-Cytoplasmic	238	259	0.69
Transmembrane Helix	260	282	0.77
Cytoplasmic	283	291	0.69
Transmembrane Helix	292	311	0.90
Non-Cytoplasmic	312	316	0.65
Transmembrane Helix	317	337	0.92
Cytoplasmic	338	346	0.77
Transmembrane Helix	347	365	0.62
Non-Cytoplasmic	366	366	0.40
Transmembrane Helix	367	384	0.50
Cytoplasmic	385	492	0.58

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFDTIRQDWL GNVRNDLLAG LVVALALIPE AIAFSIIAGV DPKVGLYASF CIAVVIAFVG  60
   61 GRPGMISAAT GAMALVMVVL VKEHGLQYLL AATVLTGILQ IIAGWVRLGS LMRFVSRSVV 120
  121 TGFVNALAIL IFMAQLPELI DVTWHVYAMT AAGLGIIYGL PYITRAVPSP LITIVVLTIV 180
  181 AMVLDLDIRR VGDMGELPDS LPIFLLPDVP LNWETLGIIF PYALTLMVVG LLESLMTATI 240
  241 VDDLTDTKSN KNRECVGQGV ANIASGFIGG MAGCAMIGQS VINVKSGGRG RLSTLVAGVF 300
  301 LLIMVVFADA WVSQIPMAAL VAVMIMVSIG TFSWSSIRDL KDHPRSSSVV MLATVAVTVA 360
  361 THDLARGVLT GVLLSGFFFA HKVGQILYLR SMVDDDGRVR TYRVFGQVFF ASADRFIAAF 420
  421 DYQEVIERVC IDVSRAHFWD ITAISALDKV ILKFRREGTE VEVIGLNEAS ATMVDRFAVH 480
  481 DKDGSDDLLM GQ