YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|88703491, gi\|...
Protein type:	Globular with Signal Peptide
Type Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKAPVRVTVT GAAGQIGYAL LFRIASGAML GDDQPVILHL LDITPAMDAL EGVRMELDDC  60
   61 AFPLLAGIVC TDDPNVGFKD ADYALLVGAR PRGPGMERKD LLEANAAIFS VQGKAINDHA 120
  121 SRDIRVLVVG NPANTNALIT QRNAPDIDPR NFTAMMRLDH NRAKTQIAQK LDAPVTAVST 180
  181 MTVWGNHSAT QYPDLHHSTV NGKVAVDAVE QQWYEDEFIP TVQQRGAAII KARGASSAAS 240
  241 AANAAIDHMR DWALGTPEGD WVSMGVYSDG SYGIAEGLIY SFPCRCSGGD WSIVQGLEIN 300
  301 DFSRGRMQAT EQELTEERDA VADLLP

Type	Start	End	Confidence
Signal Peptide	1	19	0.54
N-region	1	10
H-region	11	16
C-region	17	19
Cleavage Site	19	20
Non-Cytoplasmic	20	326	0.98