YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|91228458, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	21	0.99
N-region	1	12
H-region	13	18
C-region	19	21
Cleavage Site	21	22
Non-Cytoplasmic	22	211	0.99
Transmembrane Helix	212	234	0.88
Cytoplasmic	235	251	0.81
Transmembrane Helix	252	275	0.87
Non-Cytoplasmic	276	285	0.82
Transmembrane Helix	286	308	0.92
Cytoplasmic	309	329	0.90
Transmembrane Helix	330	352	0.90
Non-Cytoplasmic	353	369	0.78
Transmembrane Helix	370	390	0.95
Cytoplasmic	391	403	0.80
Transmembrane Helix	404	420	0.95
Non-Cytoplasmic	421	428	0.69
Transmembrane Helix	429	447	0.95
Cytoplasmic	448	458	0.86
Transmembrane Helix	459	481	0.88
Non-Cytoplasmic	482	610	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRALLSVLLL GLITFSTPSL ALFGKDQFNS SQNNSFGSSS DSFVPVDQAF PFNFYQQDDK  60
   61 LMLDWQVRDG YYLYQERLSV AGEKVSLGEL QMEDGTPHKD EFFGDVHIYT QPLFVNVPMY 120
  121 DWQDGARVVV QYQGCAKAGF CYPPETRVIP ISAFTSSNSD STTATTASKA EQAPTATPPA 180
  181 VQSSSSADTP SAPVTQQDSL AANLADNWWT PLLFLALGVG LAFTPCVLPM YPILTSIVLG 240
  241 SGKLSQRRAL GLSFVYVQGM ALTYTLLGLV VASAGMQFQA AMQHPYVLIG LSVLFIALAL 300
  301 SMFGLYSLQL PSNVQTWLNN LSNKQQGGSS AGVFAMGAIS GLVCSPCTTA PLSGALLYVA 360
  361 QSGDLLTGGI ALYALAMGMG IPLILVAVFG NKLLPKAGGW MDRVKTLFGF ILLAAPIFLL 420
  421 ERIMPEMWST ILWSALGIAA FGWLYHIKNS LEFGGWKQSA VGIIAVLGLL ASAQPILNYW 480
  481 FGNSTTQTQQ ATVSFTRIAN VAELEEQLAL AKAAGKPVML DFYADWCVAC KEFEKYTFHD 540
  541 PSVEAKLQDF VLLQADVTKN QVQDIELLKH MSVLGLPTIE FWDASGEHVS NARLTGFMQA 600
  601 EPFLEHIKQF