YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|91188505, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	15	0.95
Transmembrane Helix	16	36	0.90
Cytoplasmic	37	53	0.84
Transmembrane Helix	54	75	0.90
Non-Cytoplasmic	76	95	0.85
Transmembrane Helix	96	118	0.92
Cytoplasmic	119	126	0.95
Transmembrane Helix	127	147	0.95
Non-Cytoplasmic	148	187	0.91
Transmembrane Helix	188	208	0.94
Cytoplasmic	209	218	0.80
Transmembrane Helix	219	238	0.94
Non-Cytoplasmic	239	387	0.99
Transmembrane Helix	388	409	0.93
Cytoplasmic	410	420	0.86
Transmembrane Helix	421	444	0.88
Non-Cytoplasmic	445	470	0.91
Transmembrane Helix	471	493	0.87
Cytoplasmic	494	528	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIDVVDLSRL QFALTAMYHF LFVPLTLGMA FLLAIMESMY VMTNKQIYKD MTKFWGKLFG  60
   61 INFALGVATG LTMEFQFGTN WSYYSHYVGD IFGAPLAIEA LVAFFLESTF VGLFFFGWDR 120
  121 LSKRQHLAVT WLVALGSNFS ALWILIANGW MQNPVGADFN FETMRMEMVS FSEVVLNPVA 180
  181 QVKFVHTVAS GYTCGAMFIL GISSYYLLKG RDIAFARRSF AIAASFGIAA ILSTIVLGDE 240
  241 SGYELGEVQK VKLAAIEAEW HTEPAPAAFT LFGVPNQETM HTDYAIKIPY VMGIIATRSF 300
  301 DEQVTGLRDL RDEHVDRIRD GMYAYELLEK LRAGDKSEEN MTAFDEVKGD LGYGLLLKRY 360
  361 TDNVVDATEE QIQAAADDSI PTVWPLFWSF RIMVACGFIM LFVFGAAFIQ TCRQKIEQKQ 420
  421 WILKAALFSI PLPWIAIEAG WFVAEYGRQP WAVGEILPVH VAASALTAGE IWTSLFAILA 480
  481 LYTVFLIAEV YLMLKFARKG PSSLKTGRYH FEQNADSVED KVSRQVEA