YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|91227493, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	18	0.94
Transmembrane Helix	19	38	0.92
Non-Cytoplasmic	39	43	0.84
Transmembrane Helix	44	66	0.92
Cytoplasmic	67	86	0.96
Transmembrane Helix	87	107	0.94
Non-Cytoplasmic	108	112	0.78
Transmembrane Helix	113	131	0.92
Cytoplasmic	132	136	0.88
Transmembrane Helix	137	156	0.90
Non-Cytoplasmic	157	162	0.79
Transmembrane Helix	163	183	0.89
Cytoplasmic	184	206	0.90
Transmembrane Helix	207	226	0.92
Non-Cytoplasmic	227	233	0.76
Transmembrane Helix	234	253	0.92
Cytoplasmic	254	263	0.85
Transmembrane Helix	264	283	0.92
Non-Cytoplasmic	284	284	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSAEKAKAYW QLMRMDRPIG SLLLMWPTIW ALIISAQGMP SWDVFIVFVL GVFLMRSAGC  60
   61 VINDFADRKV DGHVKRTKQR PLPSGKVTAK EAIGLFLVLG ISSFLLVLTM NPLTIQLSFA 120
  121 GIVLAFIYPF MKRYTHIPQL FLGLAFSWAI PMAWAAQTGE LPLIVWFLFL INALWTIAYD 180
  181 TQYAMVDRDD DLKIGIKSTA ILFGRHDKLI IGVLQLITLA MLVWLGQFYQ LGQSYYWTLL 240
  241 IAASLFVYQQ HLIRHREREL CFKAFLNNNY VGMVIAIGLL VAFW