YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|91226929, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.88
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTFNIHAVT FSKVSQHTEP KTVLSVVVPF FNEQEVLPEF HRRLAAVLDE MPERCEIVYV  60
   61 DDGSKDDSLM IAQNFSQSSS DVRCIALSRN FGKESAMSAG LEHCQGEAVI VIDADLQDPP 120
  121 ELIPQMVSKW REGYDVVNMQ RSERHGETWF KRFSAACFYK VLNSMAKLDV PENVGDFRLL 180
  181 SAKVVKHINA LPERNRYMKG IFSWPGFKQV TVQFERDARF CGETKWNYLK LIGLAMDGIT 240
  241 SFSIRPLRLA TLAGALVAFS AFIYGAFIVM KTVVFGEPVT GYPSMMVVQL ALGGVQLLSI 300
  301 GLLGEYIGRI FVETKQRPLY LVQSVYEQPA KHQSIQTMKF KLGETA

Type	Start	End	Confidence
Cytoplasmic	1	248	0.94
Transmembrane Helix	249	270	0.91
Non-Cytoplasmic	271	285	0.80
Transmembrane Helix	286	307	0.88
Cytoplasmic	308	346	0.91