YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|91188860, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSIQPNSRQL ISCEECGLVV RIPDIEQGQK AQCPRCSHSL TKVNAKPYQS VIAISSACLI  60
   61 MLVLSISFPF MSFSVQGLSQ EITLLHAAKM LAEFQNVLLG VLLLATVIVL PAIYVGLILF 120
  121 LHLEALKARK HTPSKKQQRM AKVLCRLLFR VEPWLMVDVF LIGVLVSLIK IASLADIGMG 180
  181 TSFWAFCVYT VLVVKCISMV DKSWLWGHFI PAIELPDVKE GDTHHNHNHI GCHTCHQLNP 240
  241 IEAKKHQHCI RCKSPIHKYN PADNLQKAWA LLFASIIFYI PANLYPMMYT VSLGHAEGST 300
  301 IMEGVILLWH LGSYPIAMVI FFASVFIPMA KMLALAWLYY NAQKARYLPH EESISRLKIY 360
  361 RITEFIGRWS MIDIFVVAIL VALVQLQNLM AIYPGPAALS FAAVVIFTML SAMIFDSRLL 420
  421 WQLPQNEVQE PISDNLNEKA KYE

Type	Start	End	Confidence
Cytoplasmic	1	50	0.97
Transmembrane Helix	51	71	0.92
Non-Cytoplasmic	72	99	0.89
Transmembrane Helix	100	123	0.91
Cytoplasmic	124	146	0.94
Transmembrane Helix	147	172	0.79
Non-Cytoplasmic	173	179	0.65
Transmembrane Helix	180	199	0.90
Cytoplasmic	200	267	0.97
Transmembrane Helix	268	289	0.87
Non-Cytoplasmic	290	305	0.92
Transmembrane Helix	306	330	0.77
Cytoplasmic	331	364	0.88
Transmembrane Helix	365	386	0.92
Non-Cytoplasmic	387	391	0.80
Transmembrane Helix	392	415	0.86
Cytoplasmic	416	443	0.97