YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|91226592, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEPQQEKQAQ QLVRYPHSNE LYDAPIDLRE LFKSLWRGKW VVIATTFTFA VGSVIYALSL  60
   61 PNVYKADALL SPAESAGGGG LSKMAGQLGG LAALAGVNLG GGGASQTDLA VQVMKSRQFA 120
  121 EAFIEKYDLL VPLMAAKDWD LSKNQLVLDD EIYNSKTGMW VREPDGLRGP KPTPQEAYEV 180
  181 FSKNVLSVNK DDETGLYTVS VQHFSPYLTK QWVNWLIEDI NKVMRERTIS EVSQNLTYLN 240
  241 TQLQKTSVAE MQSTFYSLIE EQTKSLMLAE VQDEFIFKTV DPAVVPELKS SPNRALICVI 300
  301 GTLLGGILGM IIILVNYSFK EDEIS

Type	Start	End	Confidence
Cytoplasmic	1	38	0.96
Transmembrane Helix	39	60	0.92
Non-Cytoplasmic	61	84	0.92
Transmembrane Helix	85	107	0.81
Cytoplasmic	108	295	0.95
Transmembrane Helix	296	317	0.93
Non-Cytoplasmic	318	325	0.89