YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|91226178, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.75
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVTSSQNHQ YFSPKEMMVE AEKFALSKAN KTSSMTLSLA IMAGAFIGLA FLFYITVTTG  60
   61 STGAGWGLSR LAGGLAFSMG LILIVICGGE LFTSSVLSSI SWANKQISFG KMLSIWGKVY 120
  121 VGNFIGAMFL LALVTAAGLY QMDGGQWGLN ALNIAQHKLH HTLIQAFALG ILCNLLVCLA 180
  181 IWLTFSSANA MTKAAMTILP VAMFVSSGFE HCVANMFMVP LGIVIANFAP ESFWASVGVP 240
  241 ASQYTDLNIS HFITANLIPV TLGNIVGGAV LVGLSNWCIF RRPELKAANI SSITTTTTLS 300
  301 SVKDFTMKNA SFVKDIMNPK PITIRAETPI AAALDVLLDN NVTSAPVVDV QNRLVGFFSA 360
  361 HDVMVELWCE DYIPVKDQKV VDIMSRDVVA IDADDRLVDV VEFLCIDKEQ LYPASSMGIA 420
  421 TRLTSLSLEE RAKSIKVSKP QVLPVLENGQ MVGVVTRTEV LKALRPIFGE RLNLVEKSEL 480
  481 ETA

Type	Start	End	Confidence
Cytoplasmic	1	34	0.98
Transmembrane Helix	35	57	0.91
Non-Cytoplasmic	58	74	0.83
Transmembrane Helix	75	98	0.88
Cytoplasmic	99	118	0.86
Transmembrane Helix	119	140	0.94
Non-Cytoplasmic	141	162	0.93
Transmembrane Helix	163	185	0.93
Cytoplasmic	186	200	0.76
Transmembrane Helix	201	226	0.75
Non-Cytoplasmic	227	256	0.84
Transmembrane Helix	257	280	0.87
Cytoplasmic	281	483	0.95