YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|91225076, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.58
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	18	0.58
Transmembrane Helix	19	40	0.89
Cytoplasmic	41	48	0.59
Transmembrane Helix	49	73	0.87
Non-Cytoplasmic	74	93	0.61
Transmembrane Helix	94	117	0.87
Cytoplasmic	118	129	0.85
Transmembrane Helix	130	153	0.83
Non-Cytoplasmic	154	166	0.76
Transmembrane Helix	167	186	0.92
Cytoplasmic	187	192	0.81
Transmembrane Helix	193	214	0.89
Non-Cytoplasmic	215	233	0.85
Transmembrane Helix	234	253	0.88
Cytoplasmic	254	311	0.74
Transmembrane Helix	312	337	0.80
Non-Cytoplasmic	338	341	0.41
Transmembrane Helix	342	365	0.83
Cytoplasmic	366	373	0.54
Transmembrane Helix	374	401	0.81
Non-Cytoplasmic	402	409	0.51
Transmembrane Helix	410	428	0.73
Cytoplasmic	429	429	0.62

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLERLFKLSE NGTNVRTEII AGVTTFLTMA YIIFVNPAIL SDTGMDRGAI FVATCLAAAI  60
   61 GCFIMGFVAN YPIAQAPGMG LNAFFTYSVV LGMGYTWQVA LAAVFVSGLL FILLSVFKIR 120
  121 EWIINSIPHS LRTGISAGIG LFLAFIALKN AGIVVDNPAT LVSMGEITSL PSVLAAIGFF 180
  181 LTIALVHRGV KGAVMIAILG VTALGLLFGD VQWGGIMSTP PSIAPTFMQL DFSGLFEVGM 240
  241 ISVVFAFLFV DLFDTAGTLV GVSQKAGLTD ENGNIPRLNK ALLADSTATS VGALLGTSNT 300
  301 TSYIESVSGV AAGGRTGLTA VVVGVLFLLA LLFSPLAGMI PAYATSGALF YVAILMLSGL 360
  361 VSIDWRDLTE ASPVVVTCLV MPLTFSIAEG ITLGFIAYAA IKLFSGKGRE VSMSVWVMSA 420
  421 IFIVKYLVG