YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|91190248, gi\|...
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKGFKTLAAG LLASLFMVSG VQAETPKNLS ELLKNVKSES IVESKENKAR EAEFKNNRDK  60
   61 QAALLQQARE ELASQQALGD QLKATFDEND KQLTELTETL RVRSGTLGEM FGVVRQYAGE 120
  121 FKGLFAASQN AVQFPQRDAL LTKLAESKEL PSTQELEAFW HTILQQVVAS GETATTQATV 180
  181 VYGEGKEAVR DVTLVGEFNA IADGKYVTYV PQTGKFEELS RQPRTNITRH VAGFESASNS 240
  241 YEPLFIDPSR GVILSLLVQS PTVQERIDQG GIVGYVILGM GAVGAIIALV CFLRLQVIGG 300
  301 KMRKQAKSET VIPGNPLGEV IQAYQEHKGD NLEDLEAKLD EIILRNAPSI ERFISSIKLF 360
  361 ASVAPLLGLL GTVMGMIGTF QAITLFGTGD PKLMAGGISE ALVTTMLGLV VAIPLLFLYT 420
  421 IVHSKGRRLV QTLEEQSAGF IARYQEKLHK AES

Type	Start	End	Confidence
Signal Peptide	1	23	0.99
N-region	1	14
H-region	15	20
C-region	21	23
Cleavage Site	23	24
Non-Cytoplasmic	24	270	0.99
Transmembrane Helix	271	293	0.95
Cytoplasmic	294	358	0.96
Transmembrane Helix	359	383	0.86
Non-Cytoplasmic	384	400	0.84
Transmembrane Helix	401	422	0.92
Cytoplasmic	423	453	0.99