YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|91184842, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.82
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	37	0.99
Transmembrane Helix	38	60	0.96
Non-Cytoplasmic	61	81	0.94
Transmembrane Helix	82	102	0.96
Cytoplasmic	103	115	0.86
Transmembrane Helix	116	139	0.82
Non-Cytoplasmic	140	159	0.95
Transmembrane Helix	160	182	0.92
Cytoplasmic	183	221	0.96
Transmembrane Helix	222	242	0.94
Non-Cytoplasmic	243	257	0.87
Transmembrane Helix	258	280	0.90
Cytoplasmic	281	297	0.90
Transmembrane Helix	298	321	0.86
Non-Cytoplasmic	322	340	0.93
Transmembrane Helix	341	361	0.94
Cytoplasmic	362	367	0.93
Transmembrane Helix	368	390	0.89
Non-Cytoplasmic	391	408	0.89
Transmembrane Helix	409	430	0.92
Cytoplasmic	431	488	0.98

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSHYESPIRK PLVTGDKSYH DVTLDVVRPV EGKANKSWWV VFSIALIAFL WGLGCIVYTV  60
   61 SEGIGTWGLN KTIGWAWDIT NFVWWVGIGH AGTLISAVLL LFRQKWRMAI NRSAEAMTIF 120
  121 SVIQAGLFPI IHMGRPWLAY WVLPIPNQFG SLWVNFNSPL LWDVFAISTY LSVSLVFWWT 180
  181 GLLPDFAMIR DRAVKPFQKR IYGILSFGWS GRAKDWQRFE EVSLVLAGLA TPLVLSVHTI 240
  241 VSFDFATSVI PGWHTTIFPP YFVAGAVFSG FAMVNTLLII MRKVSNLENY ITIQHIELMN 300
  301 IVIMITGSIV GVAYITELFM AWYSGVEYEQ YAFLNRATGP YWWAYMLMMT CNVVSPQFMW 360
  361 FPKLRRSIMF SFFISIVVNI GMWFERFVII VTSLHRDYMP SAWTMFSPTF VEIGIFVGTI 420
  421 GFFFVLFLLY ARTFPVIAQA EVKSILKTSG EKYKKIRAEK GEDANLYDMP EQQPLPNFTE 480
  481 QFNSKSNS